{
  "_id": "6a4a2dd93fcf58d53bc18bbd",
  "Package": "genie",
  "Type": "Package",
  "Title": "Fast, Robust, and Outlier Resistant Hierarchical Clustering",
  "Version": "1.0.6.9002",
  "Date": "2025-05-28",
  "Authors@R": "c(\nperson(\"Marek\", \"Gagolewski\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"marek@gagolewski.com\",\ncomment = c(ORCID = \"0000-0003-0637-6028\")),\nperson(\"Maciej\", \"Bartoszuk\", role = \"aut\",\nemail = \"bartoszuk@rexamine.com\",\ncomment = c(ORCID = \"0000-0001-6088-8273\")),\nperson(\"Anna\", \"Cena\", role = \"aut\",\nemail = \"cena@rexamine.com\",\ncomment = c(ORCID = \"0000-0001-8697-5383\"))\n)",
  "Description": "Includes the reference implementation of Genie - a\nhierarchical clustering algorithm that links two point groups\nin such a way that an inequity measure (namely, the Gini index)\nof the cluster sizes does not significantly increase above a\ngiven threshold. This method most often outperforms many other\ndata segmentation approaches in terms of clustering quality as\ntested on a wide range of benchmark datasets. At the same time,\nGenie retains the high speed of the single linkage approach,\ntherefore it is also suitable for analysing larger data sets.\nFor more details see (Gagolewski et al. 2016\n<DOI:10.1016/j.ins.2016.05.003>). For an even faster and more\nfeature-rich implementation, including, amongst others, noise\npoint detection, see the 'genieclust' package (Gagolewski, 2021\n<DOI:10.1016/j.softx.2021.100722>).",
  "License": "GPL (>= 3)",
  "BugReports": "http://github.com/gagolews/genie/issues",
  "URL": "http://genieclust.gagolewski.com/\nhttps://github.com/gagolews/genie",
  "SystemRequirements": "OpenMP, C++11",
  "RoxygenNote": "7.1.1",
  "Repository": "https://gagolews.r-universe.dev",
  "Date/Publication": "2025-05-28 11:03:07 UTC",
  "RemoteUrl": "https://github.com/gagolews/genie",
  "RemoteRef": "HEAD",
  "RemoteSha": "cf74c698e04eab6c098e5e114008f4be56ee4986",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-05 10:04:07 UTC",
    "User": "root"
  },
  "Author": "Marek Gagolewski [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0003-0637-6028>),\nMaciej Bartoszuk [aut] (ORCID: <https://orcid.org/0000-0001-6088-8273>),\nAnna Cena [aut] (ORCID: <https://orcid.org/0000-0001-8697-5383>)",
  "Maintainer": "Marek Gagolewski <marek@gagolewski.com>",
  "_user": "gagolews",
  "_type": "src",
  "_file": "genie_1.0.6.9002.tar.gz",
  "_fileid": "https://r2.ropensci.org/c10b932987e433a73b267dbab00b8e87a46412d50bf02dc0ea953e04c07be6e6",
  "_filesize": 118576,
  "_sha256": "c10b932987e433a73b267dbab00b8e87a46412d50bf02dc0ea953e04c07be6e6",
  "_expires": "2026-10-13T10:11:35.000Z",
  "_created": "2026-07-05T10:04:07.000Z",
  "_published": "2026-07-05T10:11:37.323Z",
  "_jobs": [
    {
      "job": 85213237707,
      "time": 139,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8090709505"
    },
    {
      "job": 85213237678,
      "time": 130,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8090707953"
    },
    {
      "job": 85213237684,
      "time": 135,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8090708817"
    },
    {
      "job": 85213237696,
      "time": 128,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8090707634"
    },
    {
      "job": 85213237691,
      "time": 93,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8090703556"
    },
    {
      "job": 85213237687,
      "time": 388,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8090739613"
    },
    {
      "job": 85213237680,
      "time": 97,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8090704115"
    },
    {
      "job": 85213237694,
      "time": 296,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8090728493"
    },
    {
      "job": 85213036681,
      "time": 175,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8090692330"
    },
    {
      "job": 85213237656,
      "time": 146,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8090709959"
    },
    {
      "job": 85213237674,
      "time": 138,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "8090708960"
    },
    {
      "job": 85213237670,
      "time": 154,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "8090710996"
    },
    {
      "job": 85213237701,
      "time": 148,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "8090710142"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434",
  "_status": "success",
  "_upstream": "https://github.com/gagolews/genie",
  "_commit": {
    "id": "cf74c698e04eab6c098e5e114008f4be56ee4986",
    "author": "gagolews <m.gagolewski@gmail.com>",
    "committer": "gagolews <m.gagolewski@gmail.com>",
    "message": "useVpTree=FALSE\n",
    "time": 1748430187
  },
  "_maintainer": {
    "name": "Marek Gagolewski",
    "email": "marek@gagolewski.com",
    "login": "gagolews",
    "description": "Free universities!",
    "uuid": 3193581,
    "orcid": "0000-0003-0637-6028"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Depends"
    },
    {
      "package": "genieclust",
      "role": "Depends"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.0",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "version": ">= 1.0.0",
      "role": "Imports"
    },
    {
      "package": "datasets",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "stringi",
      "role": "Suggests"
    }
  ],
  "_owner": "gagolews",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "cluster",
    "cluster-analysis",
    "clustering",
    "data-analysis",
    "data-mining",
    "data-science",
    "datascience",
    "genie",
    "hierarchical-clustering-algorithm",
    "machine-learning",
    "machine-learning-algorithms",
    "outliers",
    "cpp",
    "openmp"
  ],
  "_stars": 22,
  "_contributors": [
    {
      "user": "gagolews",
      "count": 199,
      "uuid": 3193581
    },
    {
      "user": "bartoszukm",
      "count": 160,
      "uuid": 5551239
    },
    {
      "user": "cenka",
      "count": 31,
      "uuid": 3415702
    }
  ],
  "_userbio": {
    "uuid": 3193581,
    "type": "user",
    "name": "Marek Gagolewski",
    "followers": 442,
    "description": "Free universities!"
  },
  "_downloads": {
    "count": 435,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/genie"
  },
  "_devurl": "https://github.com/gagolews/genie",
  "_searchresults": 20,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/genie.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/gagolews/genie",
  "_realowner": "gagolews",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2016-03-07"
    },
    {
      "version": "1.0.2",
      "date": "2016-05-25"
    },
    {
      "version": "1.0.4",
      "date": "2017-04-27"
    },
    {
      "version": "1.0.5",
      "date": "2020-08-02"
    },
    {
      "version": "1.0.6",
      "date": "2025-12-01"
    },
    {
      "version": "1.0.7",
      "date": "2026-03-02"
    }
  ],
  "_exports": [
    "hclust2"
  ],
  "_help": [
    {
      "page": "genie-package",
      "title": "The Genie Package",
      "topics": [
        "genie-package",
        "genie"
      ]
    },
    {
      "page": "hclust2",
      "title": "Fast Hierarchical Clustering in Spaces Equipped With a Dissimilarity Measure",
      "topics": [
        "hclust2"
      ]
    }
  ],
  "_readme": "https://github.com/gagolews/genie/raw/HEAD/README.md",
  "_rundeps": [
    "deadwood",
    "genieclust",
    "quitefastmst",
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    },
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_score": 4.643452676486188,
  "_indexed": true,
  "_nocasepkg": "genie",
  "_universes": [
    "gagolews"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:40.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/3bdabea6c315d2b8f3f3ed6c893071f97720ec4f3c9e23ae8cd4cf59f26a304b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:25.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/137b28c67c9eee8cdfe9cf6a4f65ca5a79b3d06b506dd2722e92765c6b321710",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:34.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/c6490ae029cc81b6de9373477aa0271e34862b6064a17dfcc9d49fd38e31355c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:22.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/ad050169bb2417be1e313c5be6cfc598b03a5589449ffde06e6f6571caef7e12",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:05:58.000Z",
      "arch": "aarch64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/129624be40dd42bd1852846dc56deaf11aff91d78bf81babc1d65d2731e2ab29",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:09:44.000Z",
      "arch": "x86_64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/87c53efd458f6dc8c068e6c4986628ab69162d381e7b7976355174ac88997123",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:01.000Z",
      "arch": "aarch64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/b6b9d55aa82d2f528d6d29baff53f0ef8d8343b847b10f338cfc6b04fa643ec5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:08:35.000Z",
      "arch": "x86_64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/d80ef8b4e7e47ea364e9c8c12e94e187b24567914a600fa0a2e8131a95929ff3",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:50.000Z",
      "arch": "emscripten",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/5eae29778275c901fc1d0d2f717e2d78c16e27afb36757a1c272793384f5220c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:02.000Z",
      "arch": "x86_64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/e6c98c5204e83695c14674f5d2e7ad3e76a4de03f2c8997dfcd2f8af3aa5ca4e",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:12.000Z",
      "arch": "x86_64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/e70dea0e94c41a06135d8007c36f600817a09fc325b858c5285e92d153fac386",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.6.9002",
      "date": "2026-07-05T10:06:14.000Z",
      "arch": "x86_64",
      "commit": "cf74c698e04eab6c098e5e114008f4be56ee4986",
      "fileid": "https://r2.ropensci.org/b533a31d9096d470e7b646af3f6e75f117c4308620209ca7226f70b09b3dd88c",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/28737056434"
    }
  ]
}