{
  "_id": "6a6318e0d3420cf5dfdb7115",
  "Package": "genieclust",
  "Type": "Package",
  "Title": "Genie: Fast and Robust Hierarchical Clustering",
  "Version": "1.3.0.9001",
  "Date": "2026-04-05",
  "Authors@R": "c(\nperson(\"Marek\", \"Gagolewski\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"marek@gagolewski.com\",\ncomment = c(ORCID = \"0000-0003-0637-6028\")),\nperson(\"Maciej\", \"Bartoszuk\", role = c(\"ctb\")),\nperson(\"Anna\", \"Cena\", role = c(\"ctb\")),\nperson(\"Peter M.\", \"Larsen\", role = c(\"ctb\"))\n)",
  "Description": "Genie is a robust hierarchical clustering algorithm\n(Gagolewski, Bartoszuk, Cena, 2016\n<DOI:10.1016/j.ins.2016.05.003>). 'genieclust' is its faster,\nmore capable implementation (Gagolewski, 2021\n<DOI:10.1016/j.softx.2021.100722>).  It enables clustering with\nrespect to mutual reachability distances, allowing it to act as\nan alternative to 'HDBSCAN*' that can identify any number of\nclusters or their entire hierarchy.  When combined with the\n'deadwood' package, it can act as an outlier detector.\nAdditional package features include the Gini and Bonferroni\ninequality indices, external cluster validity measures (e.g.,\nthe normalised clustering accuracy, the adjusted Rand index,\nthe Fowlkes-Mallows index, and normalised mutual information),\nand internal cluster validity indices (e.g., the\nCalinski-Harabasz, Davies-Bouldin, Ball-Hall, Silhouette, and\ngeneralised Dunn indices). The 'Python' version of 'genieclust'\nis available via 'PyPI'.",
  "BugReports": "https://github.com/gagolews/genieclust/issues",
  "URL": "https://genieclust.gagolewski.com/,\nhttps://clustering-benchmarks.gagolewski.com/,\nhttps://github.com/gagolews/genieclust",
  "License": "AGPL-3",
  "Encoding": "UTF-8",
  "SystemRequirements": "OpenMP",
  "Config/roxygen2/version": "8.0.0",
  "Repository": "https://gagolews.r-universe.dev",
  "Date/Publication": "2026-06-18 08:54:58 UTC",
  "RemoteUrl": "https://github.com/gagolews/genieclust",
  "RemoteRef": "HEAD",
  "RemoteSha": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-07-24 06:41:36 UTC",
    "User": "root"
  },
  "Author": "Marek Gagolewski [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0003-0637-6028>),\nMaciej Bartoszuk [ctb],\nAnna Cena [ctb],\nPeter M. Larsen [ctb]",
  "Maintainer": "Marek Gagolewski <marek@gagolewski.com>",
  "_user": "gagolews",
  "_type": "src",
  "_file": "genieclust_1.3.0.9001.tar.gz",
  "_fileid": "https://r2.ropensci.org/092ec43210c677424ec243abef02c6c1a50d489fe28686f8b79162687f753cf6",
  "_filesize": 299052,
  "_sha256": "092ec43210c677424ec243abef02c6c1a50d489fe28686f8b79162687f753cf6",
  "_expires": "2026-11-01T07:48:46.000Z",
  "_created": "2026-07-24T06:41:36.000Z",
  "_published": "2026-07-24T07:48:48.005Z",
  "_jobs": [
    {
      "job": 89417779717,
      "time": 158,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8588791660"
    },
    {
      "job": 89417779795,
      "time": 130,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8588783073"
    },
    {
      "job": 89417779723,
      "time": 105,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8588776052"
    },
    {
      "job": 89417779711,
      "time": 123,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8588780532"
    },
    {
      "job": 89417779707,
      "time": 87,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8589919348"
    },
    {
      "job": 89417779737,
      "time": 221,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8590078068"
    },
    {
      "job": 89417779669,
      "time": 139,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8589925660"
    },
    {
      "job": 89417779725,
      "time": 212,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8590124822"
    },
    {
      "job": 89417302624,
      "time": 187,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8588741267"
    },
    {
      "job": 89417779682,
      "time": 109,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8588776267"
    },
    {
      "job": 89417779706,
      "time": 108,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8588776345"
    },
    {
      "job": 89417779678,
      "time": 92,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8588771603"
    },
    {
      "job": 89417779650,
      "time": 107,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8588775663"
    }
  ],
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512",
  "_status": "success",
  "_upstream": "https://github.com/gagolews/genieclust",
  "_commit": {
    "id": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
    "author": "gagolews <m.gagolewski@gmail.com>",
    "committer": "gagolews <m.gagolewski@gmail.com>",
    "message": "more\n",
    "time": 1781772898
  },
  "_maintainer": {
    "name": "Marek Gagolewski",
    "email": "marek@gagolewski.com",
    "login": "gagolews",
    "description": "Free universities!",
    "uuid": 3193581,
    "orcid": "0000-0003-0637-6028"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "Rcpp",
      "role": "LinkingTo"
    },
    {
      "package": "Rcpp",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "deadwood",
      "role": "Imports"
    },
    {
      "package": "datasets",
      "role": "Suggests"
    }
  ],
  "_owner": "gagolews",
  "_selfowned": true,
  "_usedby": 7,
  "_updates": [
    {
      "week": "2025-30",
      "n": 10
    },
    {
      "week": "2025-31",
      "n": 2
    },
    {
      "week": "2025-42",
      "n": 2
    },
    {
      "week": "2025-43",
      "n": 4
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2025-45",
      "n": 3
    },
    {
      "week": "2025-47",
      "n": 2
    },
    {
      "week": "2025-48",
      "n": 3
    },
    {
      "week": "2025-51",
      "n": 2
    },
    {
      "week": "2025-52",
      "n": 1
    },
    {
      "week": "2026-02",
      "n": 7
    },
    {
      "week": "2026-03",
      "n": 5
    },
    {
      "week": "2026-04",
      "n": 4
    },
    {
      "week": "2026-05",
      "n": 2
    },
    {
      "week": "2026-06",
      "n": 7
    },
    {
      "week": "2026-07",
      "n": 5
    },
    {
      "week": "2026-08",
      "n": 4
    },
    {
      "week": "2026-09",
      "n": 2
    },
    {
      "week": "2026-11",
      "n": 3
    },
    {
      "week": "2026-14",
      "n": 2
    },
    {
      "week": "2026-24",
      "n": 1
    },
    {
      "week": "2026-25",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "v1.2.0",
      "date": "2025-07-25"
    },
    {
      "name": "v1.3.0",
      "date": "2026-02-23"
    }
  ],
  "_topics": [
    "cluster-analysis",
    "clustering",
    "clustering-algorithm",
    "data-analysis",
    "data-mining",
    "data-science",
    "genie",
    "hdbscan",
    "hierarchical-clustering",
    "hierarchical-clustering-algorithm",
    "machine-learning",
    "machine-learning-algorithms",
    "mlpack",
    "nmslib",
    "python",
    "python3",
    "sparse",
    "cpp"
  ],
  "_stars": 72,
  "_contributors": [
    {
      "user": "gagolews",
      "count": 726,
      "uuid": 3193581
    },
    {
      "user": "gokceneraslan",
      "count": 2,
      "uuid": 1140359
    },
    {
      "user": "mrucker",
      "count": 1,
      "uuid": 966578
    },
    {
      "user": "dicorynia",
      "count": 1,
      "uuid": 31208891
    }
  ],
  "_userbio": {
    "uuid": 3193581,
    "type": "user",
    "name": "Marek Gagolewski",
    "followers": 443,
    "description": "Free universities!"
  },
  "_downloads": {
    "count": 1530,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/genieclust"
  },
  "_devurl": "https://github.com/gagolews/genieclust",
  "_searchresults": 17,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/genieclust.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/gagolews/genieclust",
  "_realowner": "gagolews",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.9.3",
      "date": "2020-07-30"
    },
    {
      "version": "0.9.4",
      "date": "2020-08-01"
    },
    {
      "version": "0.9.7",
      "date": "2021-01-07"
    },
    {
      "version": "0.9.8",
      "date": "2021-01-08"
    },
    {
      "version": "1.0.0",
      "date": "2021-04-22"
    },
    {
      "version": "1.0.1",
      "date": "2022-08-08"
    },
    {
      "version": "1.1.0",
      "date": "2022-09-05"
    },
    {
      "version": "1.1.3",
      "date": "2023-01-17"
    },
    {
      "version": "1.1.5-2",
      "date": "2023-10-18"
    },
    {
      "version": "1.1.6",
      "date": "2024-08-26"
    },
    {
      "version": "1.2.0",
      "date": "2025-07-24"
    },
    {
      "version": "1.3.0",
      "date": "2026-02-23"
    }
  ],
  "_exports": [
    "adjusted_fm_score",
    "adjusted_mi_score",
    "adjusted_rand_score",
    "bonferroni_index",
    "calinski_harabasz_index",
    "devergottini_index",
    "dunnowa_index",
    "fm_score",
    "gclust",
    "generalised_dunn_index",
    "genie",
    "gini_index",
    "mi_score",
    "negated_ball_hall_index",
    "negated_davies_bouldin_index",
    "negated_wcss_index",
    "normalized_clustering_accuracy",
    "normalized_confusion_matrix",
    "normalized_mi_score",
    "normalized_pivoted_accuracy",
    "normalizing_permutation",
    "pair_sets_index",
    "rand_score",
    "silhouette_index",
    "silhouette_w_index",
    "wcnn_index"
  ],
  "_help": [
    {
      "page": "cluster_validity",
      "title": "Internal Cluster Validity Measures",
      "topics": [
        "calinski_harabasz_index",
        "cluster_validity",
        "dunnowa_index",
        "generalised_dunn_index",
        "negated_ball_hall_index",
        "negated_davies_bouldin_index",
        "negated_wcss_index",
        "silhouette_index",
        "silhouette_w_index",
        "wcnn_index"
      ]
    },
    {
      "page": "compare_partitions",
      "title": "External Cluster Validity Measures and Pairwise Partition Similarity Scores",
      "topics": [
        "adjusted_fm_score",
        "adjusted_mi_score",
        "adjusted_rand_score",
        "compare_partitions",
        "fm_score",
        "mi_score",
        "normalized_clustering_accuracy",
        "normalized_confusion_matrix",
        "normalized_mi_score",
        "normalized_pivoted_accuracy",
        "normalizing_permutation",
        "pair_sets_index",
        "rand_score"
      ]
    },
    {
      "page": "gclust",
      "title": "Hierarchical Clustering Algorithm Genie",
      "topics": [
        "gclust",
        "gclust.default",
        "gclust.dist",
        "gclust.mst",
        "genie",
        "genie.default",
        "genie.dist",
        "genie.mst"
      ]
    },
    {
      "page": "inequality",
      "title": "Inequality Measures",
      "topics": [
        "bonferroni_index",
        "devergottini_index",
        "gini_index",
        "inequality"
      ]
    }
  ],
  "_readme": "https://github.com/gagolews/genieclust/raw/HEAD/README.md",
  "_rundeps": [
    "deadwood",
    "quitefastmst",
    "Rcpp"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "16-20260322-1ubuntu1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_score": 8.113206083238948,
  "_indexed": true,
  "_nocasepkg": "genieclust",
  "_universes": [
    "gagolews"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.0.9001",
      "date": "2026-07-24T06:44:26.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/66e88f533c673809a6064ee22fe13c4be1c1f2521a819d44cb95652243c8f7de",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.3.0.9001",
      "date": "2026-07-24T06:43:55.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/d5df63d1fe030e9597e4614dd61d52704ebeeaeedda056ef9f801509ffc22129",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3.0.9001",
      "date": "2026-07-24T06:43:38.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/6078d85ce125d737fc238f61e04e41eba0428cf6cc6e6cc8d51cd224901dee34",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.3.0.9001",
      "date": "2026-07-24T06:43:48.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/e2521d6a7d5d9e6765a0b133ad848bd9fc9a00c9469ef1aa70627a92f3dfcc80",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.0.9001",
      "date": "2026-07-24T07:38:29.000Z",
      "arch": "aarch64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/18c7eff18460f869665ec725ce8d4db827e2602aeb3852a6f4b9d6f790b8f434",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.3.0.9001",
      "date": "2026-07-24T07:45:19.000Z",
      "arch": "x86_64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/c0c56c48d3f535401a11b7a5bf1ac62a93b3cb2c2d6ad9b684e135636daddb3c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.3.0.9001",
      "date": "2026-07-24T07:38:33.000Z",
      "arch": "aarch64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/d5e5b660a860302cfd24c74286efe972158d21d845cc8bb8f2f005374e9b1fdf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.3.0.9001",
      "date": "2026-07-24T07:47:29.000Z",
      "arch": "x86_64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/b4c5d1879ca62141a63441995433f713918602b51652a5458a50d10689526e07",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.3.0.9001",
      "date": "2026-07-24T06:43:47.000Z",
      "arch": "emscripten",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/87e15a5313250d9f2099e135dfd7dc5a5eacb7d92d296408d9d2e0db24abc203",
      "status": "success",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.3.0.9001",
      "date": "2026-07-24T06:43:07.000Z",
      "arch": "x86_64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/072d45e38b3e5a48437b27d59f5ba8713ff4cde21abe6ec114fb6a134878206d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.3.0.9001",
      "date": "2026-07-24T06:42:51.000Z",
      "arch": "x86_64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/a25ece3330a48e128b879ba358304a597f924873c3c4433c7041b46d3cb30ef6",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.3.0.9001",
      "date": "2026-07-24T06:42:56.000Z",
      "arch": "x86_64",
      "commit": "87ae15ad2dc68c4e36a97870ef705991af3193eb",
      "fileid": "https://r2.ropensci.org/bf8564ed3e1c09990e1261a54ee12ea447673f7262490557f3f8d20ea384ea58",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gagolews/actions/runs/30072883512"
    }
  ]
}