Package: deadwood 0.9.0.9003

deadwood: Outlier Detection via Pruning Mutual Reachability Minimum Spanning Trees

Implements an anomaly detection algorithm based on a dataset's mutual reachability minimum spanning tree: 'deadwood' prunes protruding tree segments and marks small debris as outliers; see Gagolewski (2026) <https://deadwood.gagolewski.com/>. More precisely, tree edges with weights greater than the detected elbow point are removed. All the resulting connected components whose sizes do not exceed a prespecified threshold are deemed anomalous. The use of a mutual reachability distance pulls peripheral observations farther away from one another. If the dataset is comprised of well-separated clusters of heterogeneous densities, an attempt to split the dataset and refine the outlierness markers is be made. The 'Python' version of 'deadwood' is available via 'PyPI'.

Authors:Marek Gagolewski [aut, cre, cph]

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manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
deadwood/json (API)

# Install 'deadwood' in R:
install.packages('deadwood', repos = c('https://gagolews.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gagolews/deadwood/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

anomaly-detectiondata-sciencemachine-learningmachine-learning-algorithmsminimum-spanning-treeminimum-spanning-treesmstnoise-detectionoutlier-detectionoutlierscppopenmp

5.52 score 1 stars 9 packages 1.5k downloads 3 exports 2 dependencies

Last updated from:9e3fa38ce1. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK134
linux-devel-x86_64OK132
source / vignettesOK156
linux-release-arm64OK139
linux-release-x86_64OK130
macos-release-arm64OK85
macos-release-x86_64OK166
macos-oldrel-arm64OK94
macos-oldrel-x86_64OK167
windows-develOK90
windows-releaseOK90
windows-oldrelOK97
wasm-releaseOK133

Exports:deadwoodkneedle_increasingmst

Dependencies:quitefastmstRcpp

Readme and manuals

Help Manual

Help pageTopics
Deadwood: Outlier Detection via Pruning Mutual Reachability Minimum Spanning Treesdeadwood deadwood.default deadwood.dist deadwood.mst deadwood.mstclust
Knee/Elbow Point Detectionkneedle kneedle_increasing
Euclidean and Mutual Reachability Minimum Spanning Treesmst mst.default mst.dist