Package: deadwood 0.9.2.9001
deadwood: Outlier Detection via Pruning Mutual Reachability Minimum Spanning Trees
Implements an anomaly detection algorithm based on a dataset's mutual reachability minimum spanning tree: 'deadwood' prunes protruding tree segments and marks small debris as outliers; see Gagolewski (2026) <https://deadwood.gagolewski.com/>. More precisely, tree edges with weights greater than the detected elbow point are removed. All the resulting connected components whose sizes do not exceed a prespecified threshold are deemed anomalous. The use of a mutual reachability distance pulls peripheral observations farther away from one another. If the dataset is comprised of well-separated clusters of heterogeneous densities, an attempt to split the dataset and refine the outlierness markers will be made. The 'Python' version of 'deadwood' is available via 'PyPI'.
Authors:
deadwood_0.9.2.9001.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
deadwood/json (API)
| # Install 'deadwood' in R: |
| install.packages('deadwood', repos = c('https://gagolews.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gagolews/deadwood/issues
anomaly-detectiondata-sciencemachine-learningmachine-learning-algorithmsminimum-spanning-treeminimum-spanning-treesmstnoise-detectionoutlier-detectionoutlierscppopenmp
Last updated from:c59a416916. Checks:15 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 121 | ||
| linux-devel-x86_64 | OK | 96 | ||
| source / vignettes | OK | 228 | ||
| linux-release-arm64 | OK | 126 | ||
| linux-release-x86_64 | OK | 103 | ||
| macos-release-arm64 | OK | 92 | ||
| macos-release-x86_64 | OK | 215 | ||
| macos-oldrel-arm64 | OK | 92 | ||
| macos-oldrel-x86_64 | OK | 274 | ||
| windows-devel-arm64 | OK | 205 | ||
| windows-devel-x86_64 | OK | 136 | ||
| windows-release-arm64 | OK | 235 | ||
| windows-release-x86_64 | OK | 92 | ||
| windows-oldrel-x86_64 | OK | 105 | ||
| wasm-release | OK | 107 |
Exports:deadwoodkneedle_increasingmst
Dependencies:quitefastmstRcpp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Deadwood: Outlier Detection via Pruning Mutual Reachability Minimum Spanning Trees | deadwood deadwood.default deadwood.dist deadwood.mst deadwood.mstclust |
| Knee/Elbow Point Detection | kneedle kneedle_increasing |
| Euclidean and Mutual Reachability Minimum Spanning Trees | mst mst.default mst.dist |